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Les publications

Publications apparues en 2009 issues des thèses de l'ED "Sciences du Végétal".

Les noms des Doctorants/Docteurs de l'ED sont soulignés.  


Bahri B, Kaltz O, Leconte M, de Vallavieille-Pope C, Enjalbert J (2009). Tracking costs of virulence in natural populations of the wheat pathogen, Puccinia striiformis f.sp. tritici

BMC Evolutionary Biology 9 1-12.


Bahri B, Leconte M, de Vallavieille-Pope C, Enjalbert J (2009). Isolation of ten microsatellite loci in an EST library of the phytopathogenic fungus Puccinia striifomis f.sp. tritici. Conservation Genetics 10: 1425-1428.


Bahri B, Leconte M, Ouffroukh A, de Vallavieille-Pope C, Enjalbert J (2009). Geographic limits of a clonal population of wheat yellow rust in the Mediterranean region. Molecular Ecology 18: 4165-4179.


Banas D, Vollaire Y, Danger M, Thomas M, Oliveira-Ribeiro CA, Roche H, Ledore Y (2009). Can we use stable isotopes for ecotoxicological studies? Effect of DDT on isotopic fractionation in Perca fluviatilis. Chemosphere 76(6): 734-739.


Bathellier C, Tcherkez G, Bligny R, Gout E, Cornic G, Ghashghaie J (2009). Metabolic origin of the delta13C of respired CO2 in roots of Phaseolus vulgaris. New Phytologist 181: 387-399


Bathellier C, Tcherkez G, Mauve C, Bligny R, Gout E, Ghashghaie J (2009). On the resilience of nitrogen assimilation by intact roots under starvation, as revealed by isotopic and metabolomic techniques  Rapid Communications in Mass Spectrometry 23: 2847-2856


Baud S, Dichow N, Kelemen Z, d'Andréa S, To A, Berger N, Canonge M, Kronenberger J, Viterbo D, Dubreucq B, Lepiniec L, Chardot T, Miquel M (2009). Regulation of HSD1 in seeds of Arabidopsis thaliana. Plant Cell Physiol 50: 1463-1778.


Bedhomme M, Mathieu C, Pulido A, Henry Y, Bergounioux C (2009). Arabidopsis monomeric G-proteins, markers of early and late events in cell differentiation. International Journal of Developmental Biology 53: 177-185.




Ben Amor B, Wirth S, Merchan F, Laporte P, d'Aubenton-Carafa Y, Hirsch J, Maizel A, Mallory A, Lucas A, Deragon J, Vaucheret H, Thermes C, Crespi M (2009). Novel Long Non-Protein Coding Rnas Involved in Arabidopsis Differentiation and Stress Responses. Genome Res 19: 57-69.


Bendahmane A, Martin A, Boualem A, Troadec C, Dogimont C (2009). Combination of two genetic elements for controlling the floral development of a dicotyledonous plant, and use in detection and selection methods France. PCT/FR2009/051510.


Bloor JMG, Niboyet A, Leadley PW, Barthes L (2009). CO2 and inorganic N supply modify competition for N between co-occurring grass plants, tree seedlings and soil microorganisms. Soil Biology & Biochemistry 41(3): 544-552.


Boualem A, Troadec C, Kovalski I, Sari M, Perl-Treves R, Bendahmane A (2009). A conserved ethylene biosynthesis enzyme leads to andromonoecy in two cucumis species. PLoS One 4: e6144.


Bozso Z, Maunoury N, Szatmari A, Mergaert P, Ott P, Zsiros L, Szabo E, Kondorosi E, Klement Z (2009). Transcriptome analysis of a bacterially induced basal and hypersensitive responseof Medicago truncatula. Plant Molecular Biology 70: 627-646.


Castaings L, Camargo A, Pocholle D, Gaudon V, Texier Y, Boutet-Mercey S, Taconnat L, Renou J, Daniel-Vedele F, Fernandez E, Meyer C, Krapp A (2009). The nodule inception-like protein 7 modulates nitrate sensing and metabolism in ArabidopsisPlant Journal 57: 426-435.


Caut S, Angulo E, Courchamp F (2009). Avoiding surprise effects on Surprise Island: alien species control in a multi-trophic level perspective. Biological Invasions 11(7): 1689-1703.


Caut S, Angulo E, Courchamp F (2009). Variation in discrimination factors (∆15N & ∆13C): the effect of diet isotopic values and applications for diet reconstruction. Journal of Applied Ecology 46: 443-453.


Chemidlin Prevost Boure N, Ngao J, Berveiller D, Bonal D, Damesin C, Dufrêne E, Lata J-C, Le Dantec V, Longdoz B, Ponton S, Soudani K, Epron D (2009). Root exclusion through trenching does not affect the isotopic composition of soil CO2 efflux. Plant and Soil 319: 1- 13.


Coesel S, Mangogna M, Ishikawa T, Heijde M, Rogato A, Finazzi G, Todo T, Bowler C, Falciatore A (2009). Diatom PtCPF1 is a novel cryptochrome/photolyase family member with DNA repair and transcription regulation activity. EMBO Reports 10: 655-661.


David P, Chen NWG, Pedrosa-Harand A, Thareau V, Sevignac M, Cannon SB, Debouck D, Langin T, Geffroy V (2009). A nomadic subtelomeric disease resistance gene cluster in common bean. Plant Physiology 151(3): 1048-1065.


De Angeli A, Monachello D, Ephritikhine G, Frachisse J, Thomine S, Gambale F, Barbier-Brygoo H (2009). Review. Clc-Mediated Anion Transport in Plant Cells. Philos Trans R Soc Lond B Biol Sci 364: 195-201.



De Angeli A, Moran O, Wege S, Filleur S, Ephritikhine G, Thomine S, Barbier-Brygoo H, Gambale F (2009). Atp Binding to the C Terminus of the Arabidopsis Thaliana Nitrate/Proton Antiporter, Atclca, Regulates Nitrate Transport into Plant Vacuoles. J Biol Chem 284: 26526-26532.


de Lorenzo L, Merchan F, Laporte P, Thompson R, Clarke J, Crespi M (2009). A Novel Plant Leucine-Rich Repeat Receptor Kinase Regulates the Response of Medicago Truncatula Roots to Salt Stress. Plant Cell 21: 668-680.


De Muyt A, Mercier R, Mézard C, Grelon M (2009). Meiotic Recombination and Crossovers in Plants. Meiosis. Genome Dyn. R. Benavente and J. Volff. Basel, Karger. 5: 14-25.


De Muyt A, Pereira L, Vezon D, Chelysheva L, Gendrot G, Chambon A, Laine-Choinard S, Pelletier G, Mercier R, Nogue F, Grelon M (2009). A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana. PLoS Genet 5(9): e1000654.


De Riso V, Raniello R, Maumus F, Rogato A, Bowler C, Falciatore A (2009). Gene silencing in the marine diatom Phaeodactylum tricornutum. Nucleic Acids Research 37: e96.


de Vienne D, Hood M, Giraud T (2009). Phylogenetic determinants of potential host shifts in fungal pathogens. J Evol Biol 22 2532-2541.


de Vienne DM, Refrégier G, Hood M, Guigue A, Devier B, Vercken E, Smadja C, Deseille A, Giraud T (2009). Hybrid sterility and inviability in the parasitic fungal species complex Microbotryum Journal of Evolutionary Biology 22: 683–698.


Dellagi A, Segond D, Rigault M, Fagard M, Simon C, Saindrenan P, Expert D (2009). Microbial siderophores exert a subtle role in Arabidopsis during infection by manipulating the immune response and the iron status. Plant Physiology 150: 1687-1696.


Delpierre N, Dufrêne E, Soudani K, Ulrich E, Cecchini S, Boé J, François C (2009). Modelling interannual and spatial variability of leaf senescence for three deciduous tree species in France. Agricultural and Forest Meteorology 149: 938 948


Delpierre N, Soudani K, François F, Köstner B, Pontailler J, Aubinet M, Bernhofer C, Granier A, Grunwald T, Heinesch B, Longdoz B, Misson L, Nikinmaa E, Ourcival J, Rambal S, Vesala I, Dufrêne E (2009). Exceptional carbon uptake in European forests during the warm spring of 2007: a data model analysis. Global Change Biology 15: 1455- 1474


Devier B, Aguileta G, Hood M, Giraud T (2009). Ancient trans-specific polymorphism at pheromone receptor genes in basidiomycetes. Genetics 181: 209–223.


Dilmaghani A, Balesdent M, Didier J, Wu C, Davey J, Barbetti M, Hua L, Moreno-Rico O, Phillips D, Despeghel J, Vincenot L, Gout L, Rouxel T (2009). The Leptosphaeria maculansLeptosphaeria biglobosa species complex in the American continent. Plant Pathology 58: 1044-1058


Eglin T, Fresneau C, Lelarge Trouverie C, François C, Damesin C (2009). Leaf and twig delta13C during growth in relation to biochemical composition and respired CO. Tree Physiology 29(6): 777- 788.


Foyer C, Bloom A, Queval G, Noctor G (2009). Photorespiratory metabolism: genes, mutants, energetics, and redox signaling. Annual Review of Plant Biology 60: 455-484.


Frottin F, Espagne C, Traverso J, Mauve C, Valot V, Lelarge-Trouverie C, Zivy M, Noctor G, Meinnel T, Giglione C (2009). Cotranslational proteolysis dominates glutathione homeostasis to support proper growth and development. Plant Cell 21: 3296-3314.


Gascoigne J, Berec L, Gregory S, Courchamp F (2009). Dangerously few liaisons: a review of mate-finding Allee effects. Population Ecology 51: 355-372.


Geffroy V, Macadre C, David P, Pedrosa-Harand A, Sevignac M, Dauga C, Langin T (2009). Molecular analysis of a large subtelomeric nucleotide-binding-site-leucine-rich-repeat family in two representative genotypes of the major gene pools of Phaseolus vulgaris. Genetics 181(2): 405-419.


Gregory SD, MacDonald DW (2009). Prickly coexistence or blunt competition? Opuntia refugia in an invaded rodent community. Oecologia 159: 225-236.


Gruber V, Blanchet S, Diet A, Zahaf O, Boualem A, Kakar K, Alunni B, Udvardi M, Frugier F, Crespi M (2009). Identification of transcription factors involved in root apex responses to salt stress in Medicago truncatula. Mol Genet Genomics 281: 55-66.


Guidi-Rontani C, Maheswari U, Jabbari K, Bowler C (2009). Comparative ecophysiology and genomics of the toxic unicellular alga Fibrocapsa japonica. New Phytologist 185: 446-458.


Hamon P, Siljak-Yakovlev S, Srisuwan S, Robin O, Poncet V, Hamon S, Kochko A (2009). Physical mapping of rDNA and heterochomatin in 16 Coffea species: a revisited view of species differentiationChromosome Research 17: 291-304.


Haudecoeur E, Planamente S, Cirou A, Tannieres M, Shelp B, Morera S, Faure D (2009). Proline antagonizes Gaba-induced quenching of quorum-sensing in Agrobacterium tumefaciens. Proc Natl Acad Sci U S A 106: 14587-14592.


Haudecoeur E, Tannieres M, Cirou A, Raffoux A, Dessaux Y, Faure D (2009). Different regulation and roles of lactonases Aiib and Attm in Agrobacterium tumefaciens C58. Mol Plant Microbe Interact 22: 529-537.


Heyno E, Gross C, Laureau C, Culcasi M, Pietri S, Krieger-Liszkay A (2009). Plastid alternative oxidase (PTOX) promotes oxidative stress when overexpressed in tobacco. Journal of Biological Chemistry 284: 31174-31180.


Hulin V, Delmas V, Girondot M, Godfrey MH, Guillon J-M (2009). Temperature-dependent sex determination and global change: are some species at greater risk? Oecologia 160: 493-506.


Jabbour F, Ronse De Craene L, Nadot S, Damerval C (2009). Establishment of zygomorphy on an ontogenic spiral and evolution of perianth in the tribe Delphinieae (Ranunculaceae). Annals of Botany 104: 809-822.


Jossier M, Bouly J, Meimoun P, Arjmand A, Lessard P, Hawley S, Hardie G, Thomas M (2009). SNRK1 (SNF1-related kinase 1) has a central role in sugar and ABA signalling in Arabidopsis thaliana. Plant Journal 59: 316-328.


Kim W, Benhamed M, Servet C, Latrasse D, Zhang W, Delarue M, Zhou D (2009). Histone acetyltransferase GCN5 interferes with the miRNA pathway in Arabidopsis. Cell Research 19: 899-909.


Korn A, Ajlani G, Lagoutte B, Gall A, Sétif P (2009). Ferredoxin:NADP+ oxidoreductase association with phycocyanin modulates its properties. Journal of Biological Chemistry 284: 31789-31797.


Kretschmer M, Leroch M, Mosbach A, Walker A, Fillinger S, Mernke D, Schoonbeek H, Pradier J, Leroux P, De Waard M, Hahn M (2009). Fungicide-driven evolution and molecular basis of multidrug resistance in field populations of the grey mould fungus Botrytis cinerea. Plos Pathogens 5: 13.


Louis J, Meyer S, Maunoury Danger F, Fresneau C, Meudec E, Cerovic ZG (2009). Seasonal changes in optically assessed epidermal phenolic compounds and chlorophyll contents in leaves of sessile oak (Quercus petraea): towards signatures of phenological stage. Functional Plant Biology 36: 732- 741  


Maheswari U, Mock T, Armbrust EV, Bowler C (2009). Update of the Diatom EST Database: a new tool for digital transcriptomics. Nucleic Acids Research 37: D1001-1005.


Mainguet S, Gakière B, Majira A, Pelletier S, Bringel F, Guérard F, Caboche M, Berthomé R, Renou J (2009). Uracil salvage is necessary for early Arabidopsis development. Plant Journal 60: 280-291.


Martin A, Troadec C, Boualem A, Rajab M, Fernandez R, Morin H, Pitrat M, Dogimont C, Bendahmane A (2009). A transposon-induced epigenetic changes leads to sex determination in melon. Nature 461: 1135-1139.


Maseyk K, Seibt U, Ghashghaie J, Bathellier C, Almeida P, Lobo de Vale R, Yakir D, Pereira JS, Mencuccini M, Wingate L (2009). Biotic and abiotic factors affecting the d13C of soil respired CO2 in a Mediterranean oak woodland. Isotopes in Environmental & Hearth Studies 45: 343-359   


Matakiadis T, Alboresi A, Jikumaru Y, Tatematsu K, Pichon O, Renou J, Kamiya Y, Nambara E, Truong H (2009). The Arabidopsis abscisic acid catabolic gene CYP707A2 plays a key role in nitrate control of seed dormancy. Plant Physiology 149: 949-960.


Maumus F, Allen E, Mhiri C, Hu H, Jabbari K, Vardi A, Grandbastien MA, Bowler C (2009). Potential impact of stress activated retrotransposons on genome evolution in a marine diatom. BMC Genomics 10: 624.


Maunoury Danger F, Bathellier C, Laurette J, Fresneau C, Ghashghaie J, Damesin C, Tcherkez G (2009). Is there any 12C/13C fractionation during starch remobilisation and sucrose export in potato tubers? . Rapid Communications in Mass Spectrometry 23: 2527-2533


Mboup M, Leconte M, Gautier A, Wan A, Chen W, de Vallavieille-Pope C, Enjalbert J (2009). Evidence of genetic recombination in wheat yellow rust populations of a Chinese oversummering area. Fungal Genetics and Biology 46: 299-307.



Meimoun P, Gousset-Dupont A, Lebouteiller B, Ambard-Bretteville F, Besin E, Lelarge C, Mauve C, Hodges M, Vidal J (2009). The impact of PEPC phosphorylation on growth and development of Arabidopsis thaliana: Molecular and physiological Characterization of PEPC kinaqe mutants. FEBS Letters 583: 1649-1652.


Meng P, Raynaud C, Blanchet S, Massoud K, Domenichini S, Henry Y, Soubigou-Taconnat L, Lelarge-Trouverie C, Saindrenan P, Tcherkez G, Renou J, Bergounioux C (2009). Inositol metabolism controls proliferation and immunity in Arabidopsis. PLoS One 4: e7364.


Meng P, Raynaud C, Tcherkez G, Blanchet S, Massoud K, Domenichini S, Henry Y, Soubigou-Taconnat L, Lelarge-Trouverie C, Saindrenan P, Renou J, Bergounioux C (2009). Crosstalks between myo-inositol metabolism, programmed cell death and basal immunity in Arabidopsis. PLoS One 4.


Nee G, Zaffagnini M, Trost P, Issakidis-Bourguet E (2009). Redox regulation of chloroplastic glucose-6-phosphate dehydrogenase: a new role for f-type thioredoxin. FEBS Letters 583: 2827-2832.


Pariaud B, Ravigne V, Halkett F, Goyeau H, Carlier J, Lannou C (2009). Aggressiveness and its role in the adaptation of plant pathogens. Plant Pathology 58: 409-424.


Pariaud B, Robert C, Goyeau H, Lannou C (2009). Aggressiveness components and adaptation to a host cultivar in wheat leaf rust. Phytopathology 99: 869-878.


Parlange F, Daverdin G, Fudal I, Kuhn ML, Balesdent MH, Blaise F, Grezes-Besset B, Rouxel T (2009). Leptosphaeria maculans avirulence gene AvrLm4-7 confers a dual recognition specificity by Rlm4 and Rlm7 resistance genes of oilseed rape, and circumvents Rlm4-mediated recognition through a single amino acid change. Molecular Microbiology 71: 851-863


Potel F, Valadier M, Ferrario-Méry S, Grandjean O, Morin H, Gaufichon L, Boutet-Mercey S, Lothier L, Rothstein S, Hirose N, Suzuki A (2009). Assimilation of excess ammonium into amino acids and nitrogen translocation in Arabidopsis thaliana. Roles of glutamate synthases and carbamoylphosphate synthetase in leaves. FEBS Journal 276: 4061-4076.


Queval G, Thominet D, Vanacker H, Miginiac-Maslow M, Gakière B, Noctor G (2009). H2O2-activated up-regulation of glutathione in Arabidopsis involves induction of genes encoding enzymes involved in cysteine synthesis in the chloroplast. Molecular Plant 2: 344-356.


Remy E, Meyer M, Blaise F, Simon U, Kuhn D, Balesdent M, Rouxel T (2009). A key enzyme of the Leloir pathway is involved in pathogenicity of Leptosphaeria maculans toward oilseed rape. Molecular Plant-Microbe Interactions 22: 725-236


Roche H, Vollaire Y, Martin E, Rouer C, Coulet E, Grillas P, Banas D (2009). Rice fields regulate organochlorine pesticides and PCBs in lagoons of the Nature Reserve of Camargue. Chemosphere 75: 526–533.


Roche H, Vollaire Y, Persic A, Buet A, Oliveira-Ribeiro C, Coulet E, Banas D, Ramade F (2009). Organochlorines in the Vaccarès Lagoon trophic Web (Biosphere Reserve of Camargue, France). Environmental Pollution 157: 2493-2506.


Ruel K, Berrio-Sierra J, Derikvand MM, Pollet B, Thevenin J, Lapierre C, Jouanin L, Joseleau J-P (2009). Impact of CCR1 silencing on the assembly of lignified secondary walls in Arabidopsis thaliana. New Phytologist 184: 99-113.


Saint-Marcoux D, Wollman F, de Vitry C (2009). Biogenesis of cytochrome b6 in photosynthetic membranes. Journal of Cell Biology 185: 1195-1207.


Sannier J, Baker W, Anstett M, Nadot S (2009). A comparative analysis of pollinator type and pollen ornamentation in the Araceae and the Arecaceae, two unrelated families of the monocots. BMC Research Notes 2: 145.


Segond D, Dellagi A, Lanquar V, Rigault M, Patrit O, Thomine S, Expert D (2009). NRAMP genes function in Arabidopsis thaliana resistance to Erwinia chrysanthemi infection. Plant Journal 58: 195-207.


Tcherkez G, Mahe A, Gauthier P, Gout E, Bligny R, Cornic G, Hodges M (2009). In folio respiratory fluxomics revealed by 13C-isotopic labeling and H/D isotope effects highlight the non-cyclic nature of the tricarboxylic acid "cycle" in illuminated leaves. Plant Physiology 151: 620-630.


Teillac-Deschamps P, Lorrillière R, Servais V, Delmas V, Cadi A, Prévot-Julliard A-C (2009). Management strategies in urban green spaces : Models based on an introduced exotic pet turtle. Biological Conservation 142: 2258–2269.


Van Gorsel E, Delpierre N, Leuning R, Black A, Munger JW, Wofsy S, Aubinet M, Feigenwinter C, Beringer J, Bonal D, Baozhang C, Jiquan C, Clement R, Davis KJ, Desaim  AR, Dragoni D, Etzold  S, Gruenwald T, Lianhong G, Heinesch B, Hutyra LR, Wilma W, Jans J, Kutsch W, Law BE, Leclerc MY, Mammarella I, Montagnani L, Noormets A, Rebmann C, Wharton S (2009). Estimating nocturnal ecosystem respiration from the vertical turbulent flux and change in storage of CO2   

Agricultural and Forest Meteorology 149: 1919- 1930.


Walker A, Auclair C, Gredt M, Leroux P (2009). First occurrence of resistance to strobilurin fungicides in Microdochium nivale and Microdochium majus from French naturally infected wheat grains. Pest Management Science 65: 906-915.


Wenden B, Dun EA, Hanan J, Andrieu B, Weller JL, Beveridge CA, Rameau C (2009). Computational analysis of flowering in pea (Pisum sativum). New Phytologist 184: 153-167.


Wenden B, Rameau C (2009). Systems biology for plant breeding: the example of flowering time in pea. Comptes Rendus Biologies 332: 998-1006.