Pour les directeurs de thèse
Soutenances de nos doctorants
Accès Contact
Rejoindre notre Ecole Doctorale
L'Ecole Doctorale
La thèse
Doctorants étrangers
European PhD retreat
Associations des Doctorants
L'ED et vous
Equipes d'Accueil Doctorants
 Emploi et postdoc 
Les publications

Publications apparues en 2011 issues des thèses de l'ED "Sciences du Végétal".

Les noms des Doctorants/Docteurs de l'ED sont soulignés.


Adam Z, Frottin F, Espagne C, Meinnel T, Giglione C (2011). Interplay between N-Terminal Methionine Excision and Ftsh Protease Is Essential for Normal Chloroplast Development and Function in Arabidopsis. Plant Cell 23: 3745-3760.


Ahmed I, Sarazin A, Bowler C, Colot V, Quesneville H (2011). Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis. Nucleic Acids Research 39: 6919-6931.


Ajouz S, Walker A, Fabre P, Leroux P, Nicot P, Bardin M (2011). Variability of Botrytis cinerea sensitivity to pyrrolnitrin, an antibiotic produced  by biological control agents. BioControl 56: 353-363.


Ali S, Gautier A, Leconte M, Enjalbert J, De Vallavieille-Pope C (2011). A rapid genotyping method for an obligate fungal pathogen, Puccinia striiformis f.sp. tritici, based on DNA extraction from infected leaf and Multiplex PCR genotyping BMC Research Notes 4: 240.


Aubert A, Marion J, Boulogne C, Bourge M, Abreu S, Bellec Y, Faure JD, Satiat-Jeunemaitre B (2011). Sphingolipids involvement in plant endomembrane differentiation: The By2 case. Plant Journal 65: 958-971.


Bach L, Gissot L, Marion J, Tellier F, Moreau P, Satiat-Jeunemaitre B, Palauqui J-C, Napier JA, Faure J-D (2011). Very-long-chain fatty acids are required for cell plate formation during cytokinesis in Arabidopsis thaliana. Journal of Cell Science 124: 3223-3234.


Bahri B, Shah SJA, Hussain S, Leconte M, Enjalbert J, de Vallavieille-Pope C (2011). Genetic diversity of wheat yellow rust population in Pakistan and its relationship with host resistance. Plant Pathology 60: 649-660


Barbour M, Tcherkez G, Bickford C, Mauve C, Lamothe M, Sinton S, Brown H (2011). C of leaf-respired CO(2) reflects intrinsic water-use efficiency in barley. Plant, Cell & Environment 34: 792-799.


Bardou F, Merchan F, Ariel F, Crespi M (2011). Dual RNAs in plants. Biochimie 93: 1950-1954.


Berger N, Dubreucq B, Roudier F, Dubos C, Lepiniec L (2011). Transcriptional regulation of Arabidopsis LEAFY COTYLEDON2 involves RLE, a cis-element that regulates trimethylation of histone H3 at lysine-27. Plant Cell 23: 4065-4078.


Berthet S, Demont-Caulet N, Pollet B, Bidzinski P, Cezard L, Le Bris P, Borrega N, Herve J, Blondet E, Balzergue S, Lapierre C, Jouanin L (2011). Disruption of LACCASE4 and 17 results in tissue-specific alterations to lignification of Arabidopsis thaliana stems. Plant Cell 23: 1124-1137.


Billard A, Fillinger S, Leroux P, Bach J, Lanen C, Lachaise H, Beffa R, Debieu D (2011). Fenhexamid resistance in the Botrytis species complex, responsible for grey mould disease. Fungicides - Beneficial and Harmful Aspects. N. T. (ed), InTech: 61-78.


Billard A, Fillinger S, Leroux P, Lachaise H, Beffa R, Debieu D (2011). Strong resistance to the fungicide fenhexamid entails a fitness cost in Botrytis cinerea, as shown by comparisons of isogenic strains. Pest Management Science 68: 684-691


Billard A, Laval V, Fillinger S, Leroux P, Lachaise H, Beffa R, Debieu D (2011). The Allele-Specific Srobe and Primer Amplification Assay (ASPPAA): a new real-time PCR method for fine SNP quantification in pooled DNA. Applied Environmental and Microbiology: 1063-1068.


Billiard S, Lopez-Villavicencio M, Devier B, Hood M, Fairhead C, Giraud T (2011). Having sex, yes, but with whom? Inferences from fungi on the evolution of anisogamy and mating types. Biological Reviews 86:421-442


Bilsborough GD, Runions A, Barkoulas M, Jenkins HW, Hasson A, Galinha C, Laufs P, Hay A, Prusinkiewicz P, Tsiantis M (2011). Model for the regulation of Arabidopsis thaliana leaf margin development. Proceedings of the National Academy of Sciences (USA) 108: 3424-3429.


Bogunic F, Siljak-Yakovlev S, Muratovic E, Pustahija F, Medjedovic S (2011). Molecular cytogenetics and flow cytometry reveal conserved genome organization in Pinus mugo and P. uncinata. Annals of Forest Science 68: 179-187.


Boureau T, Siamer S, Perino C, Gaubert S, Patrit O, Degrave A, Fagard M, Chevreau E, Barny M (2011). The hrpN effector of Erwinia amylovora, which is involved in type III translocation, contributes directly or indirectly to callose elicitation on apple leaves. Molecular Plant Microbe Interaction 24: 577–584.


Castells E, Molinier J, Benvenuto G, Bourbousse C, Zabulon G, Zalc A, Cazzaniga S, Genschik P, Barneche F, Bowler C (2011). The conserved factor DE-ETHIOLATED1 cooperates with CUL4-SSB1DDB2 to maintain genome integrity upon UV stress. EMBO J 30: 1162-1172.


Chan J, Eder M, Crowell EF, Hampson J, Calder G, Lloyd C (2011). Microtubules and CESA tracks at the inner epidermal wall align independently of those on the outer wall of light-grown Arabidopsis hypocotyls. Journal of Cell Science 124: 1088-1094.


Chauveau O, Eggers L, Raquin C, Silverio A, Brown S, Couloux A, Cruaud C, Kaltchuk-Santos E, Yockteng R, Souza-Chies T, Nadot S (2011). Evolution of oil-producing trichomes (Iridaceae): insights from the first comprehensive phylogeny of the genus. Annals of Botany 107: 1287-1312.


Chemidlin Prévost-Bouré N, Maron P-A, Ranjard L, Nowak V, Dufrêne E, Damesin C, Soudani K, Lata J-C (2011). Seasonal dynamics of bacterial community in forest soils under different quantities of leaf litter amounts: towards linking microbial community and soil functioning. Applied Soil Ecology 47: 14-23.


Clepet C, Joobeur T, Zheng Y, Jublot D, Huang M, Truniger V, Boualem A, Hernandez-Gonzalez M, Dolcet-Sanjuan R, Portnoy V, Mascarell-Creus A, Cano-Delgado A, Katzir N, Bendahmane A, Giovannoni J, Aranda M, Garcia-Mas J, Fei Z (2011). Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon. BMC Genomics 12: 252.


Courchamp F, Caut S, Bonnaud E, Bourgeois K, Angulo E, Cerda X, Watari Y (2011). Surprise effects on Surprise Island: was the rat eradication a success? Island Invasives: Eradication and Management. C. Veitch, M. Clout and D. Towns, Proceedings of the International Conference on Island Invasives.


Crowell EF, Timpano H, Desprez T, Franssen-Verheijen T, Emons A-M, Hoefte H, Vernhettes S (2011). Differential regulation of cellulose orientation at the inner and outer face of epidermal cells in the Arabidopsis hypocotyl. Plant Cell 23: 2592-2605.


Dawson J, Rivière P, Berthellot J, Mercier F, de Kochko P, Galic N, Pin S, Serpolay E, Thomas M, Giuliano S, Goldringer I (2011). Collaborative plant breeding for organic agricultural systems in developed countries. Sustainability 3: 1206-1223.


De Martino A, Bartual A, Willis A, Meichenin A, Villazán B, Maheswari U, Bowler C (2011). Physiological and molecular evidence that environmental changes elicit morphological interconversion in the model diatopm Phaeodactylum tricornutum. Protist 162: 462-481.


de Vienne DM, Aguileta G, Ollier S (2011). Euclidean nature of phylogenetic distance matrices. Systematic Biology 60: 826-832.


Dechorgnat J, Nguyen C, Armengaud P, Jossier M, Diatloff E, Filleur S, Daniel-Vedele F (2011). From the soil to the seeds: the long journey of nitrate in plants. Journal of Experimental Botany 62: 1349-1359.


Dobrenel T, Marchive C, Sormani R, Moreau M, Mozzo M, Montane M, Menand B, Robaglia C, Meyer C (2011). Regulation of plant growth and metabolism by the TOR kinase. Biochemical Society Transactions 39: 477-481.


Drouaud J, Mézard C (2011). Characterization of meiotic crossovers in pollen from Arabidopsis thaliana. DNA Recombination: Methods and Protocols. H. Tsubouchi, Springer. 745: 223-249.


Dubois E, Córdoba-Cañero D, Massot S, Siaud N, Gakière B, Domenichini S, Guérard F, Roldan-Arjona T, Doutriaux M-P (2011). Homologous recombination is stimulated by a decrease in dutpase in Arabidopsis. PLoS One 6: e18658.


Dumont M, Massot S, Doutriaux M, A G (2011). Characterization of Brca2-deficient plants excludes the role of NHEJ and SSA in the meiotic chromosomal defect phenotype. PLoS One 6: e26696.


Enjalbert J, Dawson J, Paillard S, Rhoné B, Rousselle Y, Thomas M, Goldringer I (2011). Dynamic management of crop diversity: From an experimental approach to on-farm conservation. Comptes Rendus Biologies 334: 458-468.


Garaud C, Brachi B, Dufay M, Touzet P, Shykoff JA (2011). Genetic determination of male sterility in gynodioecious Silene nutans. Herediity 106: 757-764.


Garnier A, Lecomte J (2011). Stage-structured differential models: application to invasion ecology. Modelling complex ecological dynamics. F. R. H. B. B. Jopp, Springer: 231-240.


Germann S, Gaudin V (2011). Mapping in vivo protein-DNA interactions in plants by DamID, a DNA adenine methylation-based method. Plant Transcription Factors: Methods and Protocols. L. Yuan and S. Perry, Springer. 754: 307-321.


Giraut L, Falque M, Drouaud J, Pereira L, Martin OC, Mezard C (2011). Genome-wide crossover distribution in Arabidopsis thaliana meiosis reveals sex-specific patterns along chromosomes. PLoS Genet 7: e1002354.


Guérard F, Pétriacq P, Gakière B, Tcherkez G (2011). Liquid chromatography/time-of-flight mass spectrometry for the analysis of plant samples: A method for simultaneous screening of common cofactors or nucleotides and application to an engineered plant line. Plant Physiology and Biochemistry 49: 1117-1125.


Guerrero F, Sedoud A, Kirilovsky D, Rutherford A, Ortega J, Roncel M (2011). A high redox potential form of cytochrome c550 in Photosystem II from Thermosynechococcus elongatus. Journal of Biochemical Chemistry 286: 5985-5994.


Gwizdala M, Wilson A, Kirilovsky D (2011). In vitro reconstitution of the cyanobacterial photoprotective mechanism mediated by the Orange Carotenoid Protein. Plant Cell 23: 2631-2643.


Hasson A, Plessis A, Blein T, Adroher B, Grigg S, Tsiantis M, Boudaoud A, Damerval C, Laufs P (2011). Evolution and diverse roles of the CUP-SHAPED COTYLEDON genes in Arabidopsis leaf development. Plant Cell 23: 54-68.


Heyno E, Mary V, Schopfer P, Krieger-Liszkay A (2011). Oxygen activation at the plasma membrane: Relation between superoxide and hyxdroxyl radical production by isolated membranes. Planta 234: 35-45.


Hu Y, Shen Y, Conde E, DX Z (2011). The Role of Histone Methylation and H2A.Z Occupancy during Rapid Activation of Ethylene Responsive Genes. PLoS One 6: e28224.



Ido K, Gross C, Guerrero F, Sedoud A, Lai T, Ifuku K, Rutherford A, Krieger-Liszkay A (2011). High and low potential forms of the Q(A) quinone electron acceptor in Photosystem II of Thermosynechococcus elongatus and spinach. Journal of Photochemistry and Photobiology B 104: 154-157.


Kalunke RM, Janni M, Sella L, David P, Geffroy V, Favaron F, D'Ovidio R (2011). Transcript analysis of the bean polygalacturonase inhibiting protein gene family reveals that PVPGIP2 is expressed in the whole plant and is strongly induced by pathogen infection. Journal of Plant Pathology 93(1): 141-148.


Khan GA, Declerck M, Sorin C, Hartmann C, Crespi M, Lelandais-Briere C (2011). Micrornas as Regulators of Root Development and Architecture. Plant Mol Biol 77: 47-58.


Kit T, Shuka L, Siljak-Yakovlev S, Malo S, Pustahija F (2011). The genus Gymnospermium (Berberidaceae) in the Balkans. Phytotaxa 25: 1-17.


Krapp A, Bertome R, Orsel M, Mercey-Boutet S, Yu A, Castaings L, Elfthieh S, Major H, Renou J, Daniel-Vedele F (2011). Arabidopsis roots and shoots show distinct temporal adaptation pattern towards N starvation. Plant Physiology 157: 1255-1282.


Lakis G, Ousmane A, Sanoussi D (2011). Evolutionary dynamics of cycle length in pearl millet: the role of farmer's practices and gene flow. Genetica 139: 1381.


Latrasse D, Germann S, Houba-Herin N, Dubois E, Bui-Prodhomme D, Hourcade D, Juul-Jensen T, Le Roux C, Majira A, Simoncello N, Granier F, Taconnat L, Renou J, Gaudin V (2011). Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1. PLoS One 6: 16592.


Laureau C, Bligny R, Streb P (2011). The significance of glutathione for photoprotection at contrasting temperatures in the alpine plant species Soldanella alpina and Ranunculus glacialis. Physiologia Plantarum 143: 246–260.


Leroux P, Walker A (2011). Multiple mechanisms account for resistance to sterol 14a-demethylation inhibitors infield isolates of Mycosphaerella graminicola. Pest Management Science 67: 44-59.


Liu W, Soulié M, Perrino C, Fillinger S (2011). The osmosensing signal transduction pathway from Botrytis cinerea regulates cell wall integrity and MAP kinase pathways control melanin biosynthesis with influence of light. Fungal Genetics and Biology 48 377-387


Maaroufi-Dguimi H, Debouba M, Gaufichon L, Clément G, Hajjaji A, Suzuki A (2011). An Arabidopsis mutant disrupted in ASN2 encoding asparagine synthetase 2 exhibits low stress tolerance. Plant Physiology and Biochemistry 49: 623-628.


Macaisne N, Vignard J, Mercier R (2011). SHOC1 and PTD form an XPF-ERCC1-like complex that is required for formation of class I crossovers. Journal of Cell Science 15: 2687-2692.


Malnoë A, Wollman FA, de Vitry C, Rappaport F (2011). Photosynthetic growth despite a broken Q-cycle. Nature Communications 2: 1-6.


Marimuthu M, Jolivet S, Ravi M, Pereira L, Davda J, Cromer L, Wang L, Nogué F, Chan S, Siddiqi I, Mercier R (2011). Synthetic clonal reproduction through seeds. Science 331: 876.


Markham JE, Molino D, Gissot L, Bellec Y, Hematy K, Marion J, Belcram K, Palauqui J-C, Satiat-JeuneMaitre B, Faure J-D (2011). Sphingolipids containing very-long-chain fatty acids define a secretory pathway for specific polar plasma membrane protein targeting in Arabidopsis. Plant Cell 23: 2362-2378.


Maumus F, Rabinowicz P, Bowler C, M R (2011). Stemming epigenetics in marine stramenopiles. Curr Genomics 12: 357-370.


Mernke D, Dahm S, Walker A, Lalève A, Fillinger S, Leroch M, Hahn M (2011). Two promoter rearrangements in a drug efflux transporter gene are responsible for the appearance and spread of multidrug resistance phenotype MDR2 in Botrytis cinerea isolates in French and German vineyards. Phytopathology 101: 1176-1183.


Michelot A, Bréda N, Damesin C, Dufrêne E (2011). Growth response of three tree species (Quercus petraea (Matt.) Liebl., Fagus sylvatica L., Pinus sylvestris) to climatic variations in a French temperate forest. Forest Ecology and Managment sous presse.


Michelot A, Eglin T, Dufrêne E, Lelarge-Trouverie C, C D (2011). Comparison of seasonal variations in water-use efficiency calculated from the carbon isotope composition of tree rings and flux data in a temperate forest. Plant, Cell & Environment(34): 230-244.


Nadot S, Sannier J, Barfod AS, Baker WJ (2011). Evolution of the palm androecium as revealed by character mapping on a supertree. Flowers on the tree of life. L. Wanntorp and L. Ronse de Craene, Cambridge University Press: 156-180.


Niboyet A, Brown J, Dijkstra P, Blankinship J, Leadley P, Le Roux X, Barthes L, Barnard R, Field C, Hungate B (2011). Global change could amplify fire effects on soil greenhouse gas emissions. PLoS One: e20105.


Niboyet A, Le Roux X, Dijkstra P, Hungate B, Barthes L, Blankinship J, Brown J, Field C, Leadley P (2011). Testing interactive effects of global environmental changes on soil nitrogen cycling. Ecosphere 2: Article 56.


Noctor G, Hager J, Li S (2011). NAD synthesis and its manipulation in plants. Advances in Botanical Research 58: 153-201.


Noctor G, Queval G, Mhamdi A, Chaouch S, Foyer C (2011 ). Glutathione. The Arabidopsis Book. Rockville, MD, USA, American Society of Plant Biologists. 9: e01422011.


Picot A, Barreau C, Pinson-Galais L, Piraux F, Caron D, Lannou C, Richard-Forget F (2011). The dent stage of maize kernels is the most conducive for fumonisin biosynthesis under field conditions. Applied and Environmental Microbiology 77: 8382-8390.


Picot A, Hourcade-Marcolla D, Barreau C, Pinson-Gadais L, Caron D, Richard-Forget F, Lannou C (2011). Interactions between Fusarium verticillioides and Fusarium graminearum in corn ears and consequences for fungal development and mycotoxin accumulation. Plant Pathology 61: 140-151.


Proust H, Hoffmann B, Xie X, Yoneyama K, Schaefer DG, Yoneyama K, Nogue F, Rameau C (2011). Strigolactones regulate protonema branching and act as a quorum sensing-like signal in the moss Physcomitrella patens. Development 138: 1531-1539.


Queval G, Jaillard D, Zechmann B, Noctor G (2011). Increased intracellular H2O2 availability preferentially drives glutathione accumulation in vacuoles and chloroplasts. Plant, Cell & Environment 34: 21-32.


Remigereau M, Lakis G, Rekima S (2011). Cereal domestication and evolution of branching: evidence for soft selection in the Tb1 orthologue of pearl millet (Pennisetum glaucum [L.] R. Br.). PLoS ONE 6: e22404.


Ricroch A, Robert T, Dussert Y, Lakis G, Foury C (2011). Les complexes d’espèces et flux de gènes entre les espèces sauvages et cultivées. Biotechnologies végétales, environnement, alimentation, santé. , Vuibert.


Robert T, Khalfallah N, Martel E, Lamy F, Poncet V, Allinne C, Remigereau M, Rekima S, Leveugle M, Lakis G, Siljak-Yakovlev S, Sarr A (2011). Pennisetum. Wild crop relatives genomic and breeding resources. C. Kole, Springer.


Roudier F, Ahmed I, Bérard C, Sarazin A, Mary-Huard  T, Cortijo S, Bouyer D, Caillieux E, Duvernois-Berthet E, Al-Shikhley L, Giraut L, Després B, Drevensek S, Barneche F, Dèrozier S, Brunaud V, Aubourg S, Schnittger A, Bowler C, Martin-Magniette M, Robin S, Caboche M, Colot V (2011). Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO Journal 30: 1928-1938.


Rousselle Y, Thomas M, Galic N, Bonnin I, Goldringer I (2011). Inbreeding depression and low between-population heterosis in recently diverged experimental populations of a selfing species Heredity 106: 289-299.


Tan K, Shuka L, Siljak-Yakovlev S, Malo S, Pustahija F (2011). The genus Gymnospermium (Berberidaceae) in the Balkans. Phytotaxa 25: 1-17.


Tcherkez G, Mauve C, Lamothe M, Le Bras C, Grapin A (2011). The 13C/12C isotopic signal of day respired CO2 in variegated leaves of Pelargonium hortorum. Plant, Cell & Environment 34: 270-283.


Trontin C, Tisné S, Bach L, Loudet O (2011). What does Arabidopsis natural variation teach us (and does not teach us) about adaptation in plants? Current Opinion in Plant Biology 14: 225-231.


Virlouvet L, Jacquemot M, Gerentes D, Corti H, Bouton S, Gilard F, Valot B, Trouverie J, Tcherkez G, Falque M, Damerval C, Rogowsky P, Perez P, Noctor G, Zivy M, Coursol S (2011). The ZmASR1 protein influences branched-chain amino acid biosynthesis and maintains kernel yield in maize under water-limited conditions. Plant Physiology 157: 917-936.


Vitasse Y, François C, Delpierre N, Dufrêne E, Kremer A, Chuine I, Delzon S (2011). Assessing the effects of climate change on the phenology of European temperate trees. Agricultural and Forest Meteorology 151: 969-980.


Vivancos P, Driscoll S, Bulman C, Ying L, Emami K, Treumann A, Mauve C, Noctor G, Foyer C (2011). Perturbations of amino acid metabolism associated with glyphosate-dependent inhibition of shikimic acid metabolism affect cellular redox homeostasis and alter the abundance of proteins involved in photosynthesis and photorespiration. Plant Physiology 157: 256-268.


Walker A, Bouguennec A, Confais J, Morgant G, Leroux P (2011). Evidence of host-range expansion from new powdery mildew (Blumeria graminis) infections of triticale (x triticosecale) in France. Plant Pathology 60: 207-220.


Walker A, Gautier A, Confais J, Martinho D, Viaud M, Le Pêcheur P, Dupont J, Fournier E (2011). Botrytis pseudocinerea, a new cryptic species causing grey mould in French vineyards in sympatry with Botrytis cinerea. Phytopathology 101: 433-445.


Watari Y, Caut S, Bonnaud E, Bourgeois K, Courchamp F (2011). Recovery of an ecosystem freed from introduced rats. Island Invasives:Eradication and Management. C. Veitch, M. Clout and D. Towns, Proceedings of the International Conference on Island Invasives.